Installation¶

From CRAN¶

Once RAbHIT is available on CRAN:

install.packages("rabhit")

Development version (GitHub)¶

# install.packages("devtools")
devtools::install_github("ayeletperes/rabhit")

From source¶

Install the build dependencies, then clone and build:

install.packages(c("devtools", "roxygen2", "testthat", "knitr", "rmarkdown", "plotly"))

library(devtools)
install_deps()
document()
build()
install()

Optional features¶

Some functionality lives behind optional (Suggested) packages so the core install stays light. Install them only if you need the corresponding feature:

Feature	Package(s)
Interactive HTML5 plots (`html_output = TRUE`)	`plotly`, `htmlwidgets`
Haplotype dendrogram (`hapDendo`)	`ggdendro`
ASC / OGRDB allele-cluster naming	`piglet`

If a function that needs one of these is called without it installed, RAbHIT stops with an informative message telling you what to install.